Variant report

Variant	rs9523473
Chromosome Location	chr13:92648273-92648274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1411514	0.90[CHB][hapmap]
rs1411516	0.95[CHB][hapmap]
rs1411517	0.95[CHB][hapmap]
rs1571596	0.90[CHB][hapmap]
rs1854734	0.84[CHB][hapmap]
rs1926489	0.85[CHB][hapmap]
rs2065194	0.95[CHB][hapmap]
rs2352195	0.85[CHB][hapmap]
rs2352199	0.90[CHB][hapmap]
rs4773655	0.89[CHB][hapmap]
rs4773656	0.90[CHB][hapmap]
rs4773657	0.94[CHB][hapmap]
rs6492567	0.95[CHB][hapmap]
rs7319605	0.95[CHB][hapmap]
rs7321674	0.90[CHB][hapmap]
rs7325116	0.90[CHB][hapmap]
rs7339088	0.84[ASN][1000 genomes]
rs7982480	0.95[CHB][hapmap]
rs7983259	0.89[CHB][hapmap]
rs7986596	0.95[CHB][hapmap]
rs7989697	0.95[CHB][hapmap]
rs9301765	0.95[CHB][hapmap]
rs9515998	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9523453	0.90[CHB][hapmap]
rs9523454	0.89[CHB][hapmap]
rs9523455	0.90[CHB][hapmap]
rs9523458	0.95[CHB][hapmap]
rs9523466	0.95[CHB][hapmap]
rs9523467	0.83[ASN][1000 genomes]
rs9523472	0.84[ASN][1000 genomes]
rs9523474	0.95[CHB][hapmap]
rs9560895	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92645800-92648400	Enhancers	Brain Cingulate Gyrus	brain
2	chr13:92647000-92649400	Weak transcription	Brain Substantia Nigra	brain
3	chr13:92648200-92648400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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