Variant report

Variant	rs1978269
Chromosome Location	chr7:19417885-19417886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10227301	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10239795	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10266950	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10270244	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10447604	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12700045	0.84[AMR][1000 genomes]
rs2041520	0.82[AMR][1000 genomes]
rs2191901	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2390111	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2892928	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4391322	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4460263	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4721762	0.82[AMR][1000 genomes]
rs6461427	0.82[AMR][1000 genomes]
rs6949381	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs718778	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs981703	0.81[AMR][1000 genomes]
rs981704	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs981705	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022118	chr7:19178075-19518160	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1021194	chr7:19290916-19521199	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1021479	chr7:19363947-19485519	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887820	chr7:19378959-19448729	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887821	chr7:19381523-19448729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2757219	chr7:19396146-19574066	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv442033	chr7:19412599-19545311	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv818491	chr7:19413271-19547949	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv34500	chr7:19415543-19573763	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19416400-19418200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:19416600-19418200	Enhancers	Fetal Stomach	stomach
3	chr7:19416800-19418000	Enhancers	Colon Smooth Muscle	Colon
4	chr7:19417400-19418000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:19417400-19418000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:19417400-19418000	Flanking Active TSS	NH-A	brain
7	chr7:19417400-19418000	Flanking Active TSS	Osteobl	bone
8	chr7:19417400-19418200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:19417600-19418200	Enhancers	Fetal Brain Female	brain
10	chr7:19417600-19420600	Weak transcription	Fetal Lung	lung
11	chr7:19417600-19422600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:19417800-19418200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:19417800-19418200	Enhancers	Fetal Kidney	kidney
14	chr7:19417800-19418400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:19417800-19418800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:19417800-19422800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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