Variant report

Variant	rs1978873
Chromosome Location	chr2:212765835-212765836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55988377	1.00[ASN][1000 genomes]
rs56232132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182978	1.00[ASN][1000 genomes]
rs72933724	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933726	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72933744	1.00[ASN][1000 genomes]
rs72946542	1.00[ASN][1000 genomes]
rs72946560	1.00[ASN][1000 genomes]
rs72948509	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584323	chr2:212731514-212783175	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212760800-212766000	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:212764800-212766000	Weak transcription	Brain Germinal Matrix	brain
3	chr2:212765000-212766000	Weak transcription	Psoas Muscle	Psoas
4	chr2:212765000-212766000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:212765200-212766000	Weak transcription	Right Atrium	heart
6	chr2:212765200-212766000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:212765200-212766200	Weak transcription	Fetal Kidney	kidney
8	chr2:212765200-212766400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:212765200-212768800	Weak transcription	Brain Angular Gyrus	brain
10	chr2:212765400-212766800	Enhancers	Fetal Heart	heart
11	chr2:212765600-212771400	Weak transcription	Brain Substantia Nigra	brain
12	chr2:212765800-212766200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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