Variant report
| Variant | rs55988377 |
|---|---|
| Chromosome Location | chr2:212641454-212641455 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | JUND | chr2:212641318-212641650 | HepG2 | liver: | n/a | chr2:212641474-212641483 chr2:212641475-212641484 chr2:212641474-212641484 chr2:212641475-212641482 chr2:212641473-212641484 chr2:212641475-212641483 |
| 2 | FOS | chr2:212641414-212641589 | MCF10A-Er-Src | breast: | n/a | chr2:212641474-212641483 chr2:212641475-212641484 chr2:212641474-212641484 chr2:212641475-212641482 chr2:212641475-212641483 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MTND2P23 | TF binding region |
| ENSG00000236007 | TF binding region |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1978873 | 1.00[ASN][1000 genomes] |
| rs56232132 | 1.00[ASN][1000 genomes] |
| rs62182978 | 1.00[ASN][1000 genomes] |
| rs6715164 | 1.00[ASN][1000 genomes] |
| rs6752616 | 1.00[ASN][1000 genomes] |
| rs72933724 | 1.00[ASN][1000 genomes] |
| rs72933726 | 1.00[ASN][1000 genomes] |
| rs72933730 | 1.00[ASN][1000 genomes] |
| rs72933731 | 1.00[ASN][1000 genomes] |
| rs72933735 | 1.00[ASN][1000 genomes] |
| rs72933744 | 1.00[ASN][1000 genomes] |
| rs72945031 | 1.00[ASN][1000 genomes] |
| rs72945032 | 1.00[ASN][1000 genomes] |
| rs72945039 | 1.00[ASN][1000 genomes] |
| rs72945086 | 1.00[ASN][1000 genomes] |
| rs72945096 | 1.00[ASN][1000 genomes] |
| rs72945099 | 1.00[ASN][1000 genomes] |
| rs72946524 | 1.00[ASN][1000 genomes] |
| rs72946542 | 1.00[ASN][1000 genomes] |
| rs72946560 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72948509 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34128 | chr2:212581485-212857122 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv963773 | chr2:212638550-212645592 | Enhancers Weak transcription | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875784 | chr2:212639948-212761152 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
