Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:60005272..60008265-chr15:60014379..60016617,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11637359	0.92[MEX][hapmap]
rs12442896	0.80[AMR][1000 genomes]
rs1871504	0.88[JPT][hapmap]
rs2101019	0.92[MEX][hapmap]
rs2307273	0.92[MEX][hapmap]
rs28478168	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28510721	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28754340	0.86[EUR][1000 genomes]
rs3843695	0.82[ASN][1000 genomes]
rs3912205	0.81[ASN][1000 genomes]
rs3912206	0.81[ASN][1000 genomes]
rs3936513	0.80[AMR][1000 genomes]
rs4270113	0.92[MEX][hapmap]
rs6151441	0.90[JPT][hapmap]
rs6151483	0.88[MEX][hapmap]
rs6151551	0.92[MEX][hapmap]
rs6151553	0.86[JPT][hapmap]
rs7173827	0.90[JPT][hapmap]
rs7178211	0.90[JPT][hapmap]
rs7882	0.89[JPT][hapmap];0.92[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1979423	GTF2A2	Cis_1M	lymphoblastoid	RTeQTL
rs1979423	GTF2A2	cis	parietal	SCAN
rs1979423	GTF2A2	cis	cerebellum	SCAN
rs1979423	NARG2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60015000-60017200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:60015400-60016200	Enhancers	Hela-S3	cervix

Quick Search: