Variant report

Variant	rs3912206
Chromosome Location	chr15:60004707-60004708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11637359	0.82[YRI][hapmap]
rs12442896	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12443297	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1871499	0.81[JPT][hapmap];0.84[YRI][hapmap]
rs1871504	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1979423	0.81[ASN][1000 genomes]
rs2101019	0.82[YRI][hapmap]
rs2307273	0.90[JPT][hapmap]
rs28478168	0.81[ASN][1000 genomes]
rs2899649	0.89[JPT][hapmap];0.85[YRI][hapmap]
rs3825870	0.91[JPT][hapmap]
rs3843695	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3912205	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3936513	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4270113	0.90[JPT][hapmap];0.82[YRI][hapmap]
rs6151441	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes]
rs6151483	0.90[JPT][hapmap];0.86[YRI][hapmap]
rs6151510	0.91[JPT][hapmap];0.81[YRI][hapmap]
rs6151525	0.90[JPT][hapmap]
rs6151551	0.90[JPT][hapmap]
rs6151553	0.86[JPT][hapmap];0.81[YRI][hapmap]
rs6151561	0.89[JPT][hapmap];0.89[YRI][hapmap]
rs6494139	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7173534	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7173827	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7178211	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7882	1.00[JPT][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60002200-60004800	Enhancers	Fetal Lung	lung

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