Variant report

Variant	rs1979620
Chromosome Location	chr8:111933780-111933781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:111923379..111925877-chr8:111931950..111934366,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1489367	1.00[EUR][1000 genomes]
rs16881051	1.00[EUR][1000 genomes]
rs16881060	1.00[EUR][1000 genomes]
rs16881093	1.00[EUR][1000 genomes]
rs16881096	1.00[EUR][1000 genomes]
rs16881142	1.00[EUR][1000 genomes]
rs55936674	1.00[EUR][1000 genomes]
rs56193746	1.00[EUR][1000 genomes]
rs58023625	1.00[EUR][1000 genomes]
rs60906099	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61291358	1.00[EUR][1000 genomes]
rs73700724	1.00[EUR][1000 genomes]
rs73700744	1.00[EUR][1000 genomes]
rs73700786	1.00[EUR][1000 genomes]
rs73702356	1.00[EUR][1000 genomes]
rs73702357	1.00[EUR][1000 genomes]
rs73702358	1.00[EUR][1000 genomes]
rs73702360	1.00[EUR][1000 genomes]
rs73702381	1.00[EUR][1000 genomes]
rs73702382	1.00[EUR][1000 genomes]
rs7816438	1.00[EUR][1000 genomes]
rs7818022	1.00[EUR][1000 genomes]
rs7835683	1.00[EUR][1000 genomes]
rs7845887	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891295	chr8:111852200-112163801	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv972201	chr8:111933456-111946786	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111929600-111942400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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