Variant report

Variant	rs73700724
Chromosome Location	chr8:111848397-111848398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1489367	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881051	1.00[EUR][1000 genomes]
rs16881060	1.00[EUR][1000 genomes]
rs16881093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16881142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1979620	1.00[EUR][1000 genomes]
rs55936674	1.00[EUR][1000 genomes]
rs56193746	1.00[EUR][1000 genomes]
rs58023625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60906099	1.00[EUR][1000 genomes]
rs61291358	1.00[EUR][1000 genomes]
rs73700744	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73702356	1.00[EUR][1000 genomes]
rs73702357	1.00[EUR][1000 genomes]
rs73702358	1.00[EUR][1000 genomes]
rs73702360	1.00[EUR][1000 genomes]
rs73702381	1.00[EUR][1000 genomes]
rs73702382	1.00[EUR][1000 genomes]
rs7816438	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818022	1.00[EUR][1000 genomes]
rs7835683	1.00[EUR][1000 genomes]
rs7845887	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1031245	chr8:111716585-111875753	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891294	chr8:111754075-112163801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1032766	chr8:111779352-111995438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv2754849	chr8:111817591-112088992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1033792	chr8:111824536-111906864	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3418448	chr8:111834718-112112905	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111846600-111849400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:111846800-111848800	Enhancers	HSMMtube	muscle
3	chr8:111846800-111849000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:111847000-111848800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:111847000-111849000	Enhancers	NH-A	brain
6	chr8:111847000-111849400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:111847200-111848400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:111847200-111848600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:111847200-111848800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:111847200-111848800	Enhancers	HSMM	muscle
11	chr8:111847200-111849200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:111847200-111849400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:111847400-111848400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:111847600-111848400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr8:111847600-111849000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:111847800-111848400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:111847800-111848400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:111847800-111848600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:111847800-111848600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:111847800-111848600	Enhancers	HMEC	breast
21	chr8:111847800-111848800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:111848000-111848400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:111848200-111848400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr8:111848200-111848400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr8:111848200-111848600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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