Variant report

Variant	rs1979818
Chromosome Location	chr4:31079953-31079954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10005651	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10033574	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10084945	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10939328	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1463851	0.91[EUR][1000 genomes]
rs1499473	0.91[EUR][1000 genomes]
rs1979815	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1979816	0.97[ASN][1000 genomes]
rs2036245	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28452425	0.89[ASN][1000 genomes]
rs28532843	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28861207	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35316591	0.88[EUR][1000 genomes]
rs3947332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4352437	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4524343	0.90[ASN][1000 genomes]
rs4577529	0.92[ASN][1000 genomes]
rs4615136	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4621393	0.91[ASN][1000 genomes]
rs61441733	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6448736	0.88[ASN][1000 genomes]
rs6448737	0.88[ASN][1000 genomes]
rs6448738	0.89[ASN][1000 genomes]
rs6448740	0.91[ASN][1000 genomes]
rs6811512	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6813325	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6820873	0.97[ASN][1000 genomes]
rs6821627	0.87[ASN][1000 genomes]
rs6824760	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6825405	0.92[ASN][1000 genomes]
rs6828539	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6836089	0.85[ASN][1000 genomes]
rs6836516	0.89[ASN][1000 genomes]
rs6838664	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6843199	0.89[ASN][1000 genomes]
rs6844794	0.89[ASN][1000 genomes]
rs6848676	0.92[ASN][1000 genomes]
rs6852025	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7657737	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7678773	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7686025	0.91[EUR][1000 genomes]
rs9990809	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31066400-31088600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:31070600-31088400	Weak transcription	Fetal Stomach	stomach
3	chr4:31075600-31081400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:31077800-31088600	Weak transcription	Aorta	Aorta
5	chr4:31078600-31085200	Weak transcription	Fetal Heart	heart

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