Variant report

Variant	rs7686025
Chromosome Location	chr4:31068349-31068350
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10005651	0.90[EUR][1000 genomes]
rs10033574	0.91[EUR][1000 genomes]
rs10939328	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs1463851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1499473	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1979815	0.89[EUR][1000 genomes]
rs1979818	0.91[EUR][1000 genomes]
rs2036245	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs35316591	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3947332	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs4352437	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs61441733	0.89[EUR][1000 genomes]
rs6448740	0.90[YRI][hapmap]
rs67035639	0.85[ASN][1000 genomes]
rs6813325	0.91[EUR][1000 genomes]
rs6828539	0.90[EUR][1000 genomes]
rs6838664	0.80[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31058000-31077200	Weak transcription	Aorta	Aorta
2	chr4:31066400-31088600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:31066600-31069200	Weak transcription	Fetal Heart	heart
4	chr4:31067200-31070800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:31067800-31073400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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