Variant report

Variant	rs1980448
Chromosome Location	chr6:25626639-25626640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1980449	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281073	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328889	0.83[AFR][1000 genomes]
rs4383809	0.90[AFR][1000 genomes]
rs6456685	0.90[AFR][1000 genomes]
rs6903257	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25582000-25626800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:25585000-25627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:25585200-25629400	Weak transcription	Pancreas	Pancrea
4	chr6:25594200-25629200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:25594400-25627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:25594600-25627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:25594600-25629600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:25595000-25626800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:25595000-25627000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:25609400-25627000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:25612800-25626800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:25613200-25631000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:25619800-25628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:25622800-25627600	Weak transcription	Aorta	Aorta
15	chr6:25622800-25634800	Weak transcription	Fetal Intestine Small	intestine
16	chr6:25623000-25627200	Weak transcription	Primary T cells from cord blood	blood
17	chr6:25623400-25627200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:25624200-25626800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:25625200-25630600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:25626400-25628600	Weak transcription	HepG2	liver

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