Variant report

Variant	rs4383809
Chromosome Location	chr6:25626967-25626968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25619323..25622321-chr6:25626739..25629730,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1012899	0.81[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1074706	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1074707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1474595	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs169946	0.95[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17266491	0.85[CEU][hapmap]
rs1883259	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1980448	0.90[AFR][1000 genomes]
rs1980453	0.81[CEU][hapmap];0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2010291	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2011465	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2011472	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212930	0.95[CEU][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs212936	0.88[CEU][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs212938	0.95[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs212941	0.95[CEU][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs214049	0.94[CEU][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs214050	0.95[CEU][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs214066	0.95[CEU][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2281073	0.80[AFR][1000 genomes]
rs2328889	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34164888	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3804102	0.86[JPT][hapmap]
rs391629	0.95[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4576241	0.95[CEU][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4711086	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4711090	0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6456685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900762	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6903257	0.95[CEU][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6905986	0.88[AMR][1000 genomes]
rs6932536	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs721803	0.81[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs926326	0.95[CEU][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs932319	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9393654	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs969297	0.95[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs990849	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25585000-25627000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:25585200-25629400	Weak transcription	Pancreas	Pancrea
3	chr6:25594200-25629200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:25594400-25627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:25594600-25627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:25594600-25629600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:25595000-25627000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:25609400-25627000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:25613200-25631000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:25619800-25628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:25622800-25627600	Weak transcription	Aorta	Aorta
12	chr6:25622800-25634800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:25623000-25627200	Weak transcription	Primary T cells from cord blood	blood
14	chr6:25623400-25627200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:25625200-25630600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:25626400-25628600	Weak transcription	HepG2	liver
17	chr6:25626800-25627400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:25626800-25627800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:25626800-25628000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr6:25626800-25628200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:25626800-25629400	Enhancers	HUES48 Cell Line	embryonic stem cell

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