Variant report

Variant	rs990849
Chromosome Location	chr6:25628252-25628253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1012899	0.80[CHB][hapmap];0.87[ASN][1000 genomes]
rs1074706	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1074707	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1474595	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1883259	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1980453	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs2010291	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2011472	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs214064	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs3804102	0.86[JPT][hapmap]
rs4383809	0.93[ASN][1000 genomes]
rs6456685	0.93[ASN][1000 genomes]
rs6900762	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6932536	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs721803	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs909664	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs932319	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs9393654	0.83[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25585200-25629400	Weak transcription	Pancreas	Pancrea
2	chr6:25594200-25629200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:25594600-25629600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:25613200-25631000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:25619800-25628600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:25622800-25634800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:25625200-25630600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:25626400-25628600	Weak transcription	HepG2	liver
9	chr6:25626800-25629400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:25627000-25628800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:25627000-25628800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:25627000-25629000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:25627400-25631800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:25627800-25628800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:25627800-25629000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:25627800-25629200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:25627800-25629600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:25628000-25630000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:25628200-25631800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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