Variant report

Variant	rs214064
Chromosome Location	chr6:25540718-25540719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25535010..25536623-chr6:25538569..25540759,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10498727	0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs1474595	0.83[CEU][hapmap];0.87[AFR][1000 genomes]
rs169946	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17266491	1.00[JPT][hapmap]
rs2011472	0.81[GIH][hapmap]
rs212930	0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs212936	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs212938	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs212941	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs214049	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs214050	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs214066	0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs214736	1.00[JPT][hapmap]
rs34164888	0.82[ASN][1000 genomes]
rs34838201	0.82[EUR][1000 genomes]
rs391629	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4576241	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4711086	0.87[ASN][1000 genomes]
rs6903257	1.00[JPT][hapmap]
rs909664	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs926326	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9467527	0.82[EUR][1000 genomes]
rs969297	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs990849	0.82[EUR][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs214064	ZNF193	cis	parietal	SCAN
rs214064	BTN3A2	cis	cerebellum	SCAN
rs214064	FAM65B	cis	cerebellum	SCAN
rs214064	BTN3A2	cis	parietal	SCAN
rs214064	OR2B6	cis	parietal	SCAN
rs214064	HIST1H2BE	cis	parietal	SCAN
rs214064	HIST1H3I	cis	parietal	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25490400-25543000	Weak transcription	Hela-S3	cervix
3	chr6:25494000-25551400	Weak transcription	Left Ventricle	heart
4	chr6:25509800-25548600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:25514200-25542600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:25514200-25558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:25514400-25541600	Weak transcription	Colonic Mucosa	Colon
8	chr6:25516200-25547000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:25516200-25556800	Weak transcription	Pancreas	Pancrea
10	chr6:25516400-25556800	Weak transcription	Fetal Stomach	stomach
11	chr6:25516600-25544000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:25516800-25545200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:25516800-25606400	Weak transcription	Lung	lung
14	chr6:25517000-25542200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:25517400-25542200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:25519800-25543200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:25519800-25556800	Weak transcription	Ovary	ovary
18	chr6:25521600-25541000	Weak transcription	HSMMtube	muscle
19	chr6:25521600-25541000	Weak transcription	NHEK	skin
20	chr6:25522200-25545400	Weak transcription	Small Intestine	intestine
21	chr6:25522400-25588600	Weak transcription	HMEC	breast
22	chr6:25523000-25550600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:25523200-25541400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:25523400-25544200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
27	chr6:25533000-25541400	Strong transcription	Primary T cells from cord blood	blood
28	chr6:25535000-25541800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:25535200-25542000	Weak transcription	Placenta	Placenta
30	chr6:25536600-25542000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:25536800-25542200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:25537600-25541200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr6:25537600-25541600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:25537800-25540800	Strong transcription	Fetal Intestine Large	intestine
35	chr6:25537800-25542400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:25538000-25541600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:25538000-25544400	Weak transcription	Fetal Kidney	kidney
38	chr6:25538200-25542000	Strong transcription	Fetal Lung	lung
39	chr6:25538400-25541400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:25538400-25543400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:25538600-25563600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:25539000-25541400	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:25539000-25542600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:25539000-25561200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:25539200-25542600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:25539200-25543000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr6:25539600-25556800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:25539600-25565200	Weak transcription	Aorta	Aorta

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