Variant report

Variant	rs969297
Chromosome Location	chr6:25543639-25543640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1012899	0.85[CEU][hapmap]
rs1074706	0.84[CEU][hapmap];0.89[YRI][hapmap]
rs169946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17266491	0.90[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1883259	0.84[CEU][hapmap]
rs1980453	0.86[CEU][hapmap]
rs2010291	0.84[CEU][hapmap];0.89[YRI][hapmap]
rs2011472	0.89[CEU][hapmap];0.88[YRI][hapmap]
rs212930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212936	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs212938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs212941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs214049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs214064	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs214066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214736	1.00[JPT][hapmap]
rs34164888	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35033684	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35785909	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs391629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383809	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4576241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711086	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711090	0.80[YRI][hapmap]
rs58000836	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62392334	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6456685	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6900762	0.84[CEU][hapmap];0.88[YRI][hapmap]
rs6903257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6932536	0.84[CEU][hapmap];0.89[YRI][hapmap]
rs721803	0.86[CEU][hapmap]
rs7743652	0.88[YRI][hapmap]
rs926326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932319	0.84[CEU][hapmap];0.89[YRI][hapmap]
rs9393654	0.89[CEU][hapmap];0.89[YRI][hapmap]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25471600-25597200	Weak transcription	Gastric	stomach
2	chr6:25494000-25551400	Weak transcription	Left Ventricle	heart
3	chr6:25509800-25548600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:25514200-25558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:25516200-25547000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:25516200-25556800	Weak transcription	Pancreas	Pancrea
7	chr6:25516400-25556800	Weak transcription	Fetal Stomach	stomach
8	chr6:25516600-25544000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:25516800-25545200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:25516800-25606400	Weak transcription	Lung	lung
11	chr6:25519800-25556800	Weak transcription	Ovary	ovary
12	chr6:25522200-25545400	Weak transcription	Small Intestine	intestine
13	chr6:25522400-25588600	Weak transcription	HMEC	breast
14	chr6:25523000-25550600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:25523000-25577200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:25523400-25544200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:25530800-25584200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:25538000-25544400	Weak transcription	Fetal Kidney	kidney
19	chr6:25538600-25563600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:25538600-25592800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:25539000-25561200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:25539200-25582000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:25539600-25556800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:25539600-25565200	Weak transcription	Aorta	Aorta
25	chr6:25539800-25558200	Weak transcription	Thymus	Thymus
26	chr6:25540600-25580200	Weak transcription	Fetal Thymus	thymus
27	chr6:25540800-25550800	Weak transcription	Fetal Intestine Large	intestine
28	chr6:25540800-25556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:25541200-25553400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:25541400-25547600	Weak transcription	Primary T cells from cord blood	blood
31	chr6:25541400-25558600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:25541400-25576200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:25541600-25584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:25541600-25612000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:25541800-25558400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:25542000-25548200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:25542400-25563600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:25542600-25543800	Enhancers	Adipose Nuclei	Adipose
39	chr6:25542600-25544600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:25542600-25544800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:25543000-25544600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:25543400-25544000	Enhancers	Fetal Lung	lung
43	chr6:25543600-25548000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:25543600-25551000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:25543600-25555600	Weak transcription	Primary hematopoietic stem cells	blood

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