Variant report

Variant	rs7743652
Chromosome Location	chr6:25502076-25502077
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13217797	0.84[AMR][1000 genomes]
rs169946	0.88[YRI][hapmap]
rs212930	0.85[YRI][hapmap]
rs212936	1.00[YRI][hapmap]
rs212938	0.88[YRI][hapmap]
rs212941	0.88[YRI][hapmap]
rs214049	0.88[YRI][hapmap]
rs214050	0.88[YRI][hapmap]
rs214066	0.87[YRI][hapmap]
rs391629	0.88[YRI][hapmap]
rs4576241	0.88[YRI][hapmap]
rs6903257	0.88[YRI][hapmap]
rs926326	0.88[YRI][hapmap]
rs9295663	0.89[CHB][hapmap];0.87[YRI][hapmap]
rs969297	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25446800-25504400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:25449400-25515800	Weak transcription	Lung	lung
3	chr6:25456400-25515800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:25456400-25537000	Weak transcription	Esophagus	oesophagus
5	chr6:25463200-25532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:25464200-25518400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:25466400-25516000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:25466800-25515800	Weak transcription	Fetal Stomach	stomach
9	chr6:25471600-25597200	Weak transcription	Gastric	stomach
10	chr6:25473600-25516000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:25480000-25511400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:25480800-25523600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:25483000-25532200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:25484600-25505800	Weak transcription	Aorta	Aorta
15	chr6:25484800-25515600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:25490400-25515800	Weak transcription	Thymus	Thymus
17	chr6:25490400-25521800	Weak transcription	GM12878-XiMat	blood
18	chr6:25490400-25543000	Weak transcription	Hela-S3	cervix
19	chr6:25490600-25524600	Weak transcription	A549	lung
20	chr6:25490800-25506400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:25490800-25511600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:25490800-25515800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:25490800-25515800	Weak transcription	Ovary	ovary
24	chr6:25490800-25516400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:25490800-25521400	Weak transcription	Small Intestine	intestine
26	chr6:25491600-25521000	Weak transcription	HSMMtube	muscle
27	chr6:25494000-25515400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:25494000-25515600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:25494000-25551400	Weak transcription	Left Ventricle	heart
30	chr6:25494600-25515600	Weak transcription	Fetal Thymus	thymus
31	chr6:25495000-25515800	Weak transcription	Fetal Lung	lung
32	chr6:25495000-25516400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:25495400-25505000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:25498000-25515800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:25499600-25504000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:25499600-25505800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:25500400-25511000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:25500400-25515800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:25500400-25515800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:25500400-25516000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:25500600-25503400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:25500600-25503800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:25500600-25504400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr6:25500600-25515800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:25500600-25516000	Weak transcription	HMEC	breast
46	chr6:25500600-25516400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:25500600-25520800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr6:25500600-25523800	Weak transcription	Placenta	Placenta
49	chr6:25500800-25505000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:25500800-25509000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links