Variant report

Variant	rs34164888
Chromosome Location	chr6:25521921-25521922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25521712..25524594-chr6:25534397..25537297,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs169946	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17266491	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs212930	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs212936	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs212938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs212941	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs214049	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs214050	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs214064	0.82[ASN][1000 genomes]
rs214066	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35033684	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35785909	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs391629	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4383809	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4576241	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4711086	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58000836	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62392334	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6456685	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6903257	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs926326	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs969297	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25456400-25537000	Weak transcription	Esophagus	oesophagus
2	chr6:25463200-25532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:25471600-25597200	Weak transcription	Gastric	stomach
4	chr6:25480800-25523600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:25483000-25532200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:25490400-25543000	Weak transcription	Hela-S3	cervix
7	chr6:25490600-25524600	Weak transcription	A549	lung
8	chr6:25494000-25551400	Weak transcription	Left Ventricle	heart
9	chr6:25500600-25523800	Weak transcription	Placenta	Placenta
10	chr6:25506600-25537400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:25507600-25525600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:25509800-25548600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:25511600-25522800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:25511600-25531400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:25512200-25525600	Weak transcription	NHLF	lung
16	chr6:25513800-25524400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:25513800-25530200	Weak transcription	Brain Germinal Matrix	brain
18	chr6:25514000-25525600	Strong transcription	Primary T cells from cord blood	blood
19	chr6:25514200-25542600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:25514200-25558400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:25514400-25523000	Weak transcription	Brain Angular Gyrus	brain
22	chr6:25514400-25541600	Weak transcription	Colonic Mucosa	Colon
23	chr6:25514600-25523800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:25514800-25537800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:25515000-25538600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:25515200-25522000	Strong transcription	Duodenum Mucosa	Duodenum
27	chr6:25515400-25525000	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr6:25515600-25523000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr6:25515600-25525600	Strong transcription	Fetal Thymus	thymus
30	chr6:25515800-25522600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:25515800-25523200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:25515800-25523400	Strong transcription	Fetal Intestine Large	intestine
33	chr6:25516000-25524200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:25516200-25547000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:25516200-25556800	Weak transcription	Pancreas	Pancrea
36	chr6:25516400-25523600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:25516400-25556800	Weak transcription	Fetal Stomach	stomach
38	chr6:25516600-25539600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:25516600-25544000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:25516800-25522000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr6:25516800-25522600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:25516800-25537200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:25516800-25545200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:25516800-25606400	Weak transcription	Lung	lung
45	chr6:25517000-25542200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr6:25517200-25530200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:25517400-25540200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr6:25517400-25542200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:25517800-25523200	Strong transcription	Aorta	Aorta
50	chr6:25518000-25524000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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