Variant report

Variant	rs1982135
Chromosome Location	chr8:58826865-58826866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11786413	0.82[CHB][hapmap]
rs13250052	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13268276	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13274347	0.82[CHB][hapmap]
rs1436021	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17236793	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6986741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58824800-58827200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:58824800-58832800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:58826000-58827200	Enhancers	Fetal Muscle Leg	muscle
4	chr8:58826200-58827800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:58826400-58827800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:58826400-58828800	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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