Variant report

Variant	rs11786413
Chromosome Location	chr8:58806905-58806906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10095403	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13250052	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13253940	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13256902	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13273087	0.90[ASN][1000 genomes]
rs13274347	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1865724	0.90[ASN][1000 genomes]
rs2082911	0.87[ASN][1000 genomes]
rs34390402	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35132214	0.94[ASN][1000 genomes]
rs35769297	0.90[ASN][1000 genomes]
rs35939921	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4145789	0.88[ASN][1000 genomes]
rs4738634	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4738638	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738639	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4738640	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58805800-58807600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:58806000-58807400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:58806200-58807400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr8:58806200-58807800	Enhancers	Primary T cells from cord blood	blood
5	chr8:58806400-58807000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:58806400-58807400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr8:58806400-58807400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:58806400-58807600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:58806400-58807800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr8:58806600-58807000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr8:58806600-58807000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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