Variant report

Variant	rs13256902
Chromosome Location	chr8:58796826-58796827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10095403	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11786413	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13250052	0.87[AMR][1000 genomes]
rs13253940	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13273087	0.98[ASN][1000 genomes]
rs13274347	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1865724	0.98[ASN][1000 genomes]
rs2082911	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34390402	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35132214	0.94[ASN][1000 genomes]
rs35769297	0.98[ASN][1000 genomes]
rs35939921	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4145789	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4738634	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4738638	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738639	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4738640	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2509446	chr8:58796020-58797474	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58789200-58804000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:58795200-58797200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:58796000-58799400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:58796200-58797000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr8:58796600-58799400	Enhancers	NHDF-Ad	bronchial
6	chr8:58796800-58800000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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