Variant report

Variant	rs4145789
Chromosome Location	chr8:58795494-58795495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10095403	0.88[ASN][1000 genomes]
rs11786413	0.81[CEU][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs13253940	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13256902	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13273087	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13274347	0.92[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1865724	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2082911	0.90[ASN][1000 genomes]
rs34390402	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35132214	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35769297	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35939921	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738634	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738638	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4738639	0.93[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4738640	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58789200-58804000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:58790800-58796000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:58795200-58797200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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