Variant report

Variant	rs4738634
Chromosome Location	chr8:58800670-58800671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10095403	0.88[ASN][1000 genomes]
rs11786413	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13253940	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13256902	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13273087	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13274347	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1865724	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2082911	0.90[ASN][1000 genomes]
rs34390402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35132214	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35769297	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35939921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4145789	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738638	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4738639	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4738640	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58789200-58804000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:58797000-58801000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:58799400-58801200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:58800000-58801400	Enhancers	Stomach Mucosa	stomach
5	chr8:58800400-58801200	Enhancers	Liver	Liver
6	chr8:58800600-58801400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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