Variant report

Variant	rs1983039
Chromosome Location	chr3:21556886-21556887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:21533469..21535837-chr3:21555368..21557096,2	K562	blood:
2	chr3:21534337..21537084-chr3:21554573..21557096,2	K562	blood:
3	chr3:21554662..21556901-chr3:21563061..21566004,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510513	0.92[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13317601	0.96[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1457590	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs162412	0.81[JPT][hapmap]
rs1978516	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2059400	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs3843876	0.92[CEU][hapmap]
rs3860577	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3860578	0.96[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs6789053	0.93[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs7615120	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs7642500	0.96[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7646837	0.96[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9310647	0.90[JPT][hapmap]
rs9310648	0.95[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9310649	0.88[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9810352	0.92[CEU][hapmap]
rs9829496	0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9862072	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9862207	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21515800-21563000	Weak transcription	Fetal Stomach	stomach
2	chr3:21526200-21559000	Weak transcription	Aorta	Aorta
3	chr3:21550000-21561800	Weak transcription	Fetal Brain Male	brain
4	chr3:21553200-21574400	Weak transcription	Fetal Muscle Leg	muscle

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