Variant report

Variant	rs1984403
Chromosome Location	chr1:172466855-172466856
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172444481..172448040-chr1:172465983..172470352,4	MCF-7	breast:
2	chr1:172443498..172448130-chr1:172464565..172470217,6	MCF-7	breast:
3	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
4	chr1:172464666..172471866-chr1:172497727..172502912,19	MCF-7	breast:
5	chr1:172460626..172462699-chr1:172466719..172469115,2	K562	blood:
6	chr1:172464396..172473941-chr1:172479690..172484856,11	MCF-7	breast:
7	chr1:172416555..172419141-chr1:172466431..172468171,3	MCF-7	breast:
8	chr1:172464975..172470841-chr1:172497747..172503666,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489278	0.87[CEU][hapmap];0.92[JPT][hapmap]
rs10489279	0.91[CEU][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911822	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10911823	0.82[ASN][1000 genomes]
rs12117531	0.82[ASN][1000 genomes]
rs12729948	0.83[ASN][1000 genomes]
rs12730136	0.88[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12731039	0.81[ASN][1000 genomes]
rs12749864	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12752056	0.81[ASN][1000 genomes]
rs12753093	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12756519	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs12758548	0.92[JPT][hapmap]
rs12760161	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs17370159	0.81[ASN][1000 genomes]
rs2516064	0.92[JPT][hapmap]
rs3213552	0.87[CEU][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs35702642	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35780299	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7517917	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7549441	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172464800-172467200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:172464800-172471000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:172465000-172467000	Enhancers	Stomach Mucosa	stomach
4	chr1:172465000-172467800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:172465000-172468600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:172465600-172470000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:172465800-172467000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:172465800-172467200	Enhancers	Hela-S3	cervix
9	chr1:172465800-172470800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:172466000-172467000	Enhancers	Fetal Heart	heart
11	chr1:172466000-172467200	Enhancers	NHEK	skin
12	chr1:172466000-172467400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:172466000-172470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:172466200-172467000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:172466200-172467000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:172466200-172467000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:172466200-172467200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:172466200-172467600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:172466200-172470800	Weak transcription	Esophagus	oesophagus
20	chr1:172466400-172467000	Enhancers	HepG2	liver
21	chr1:172466400-172467200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr1:172466600-172468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:172466800-172467000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:172466800-172467400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr1:172466800-172468000	Weak transcription	Fetal Muscle Leg	muscle
26	chr1:172466800-172468200	Weak transcription	Fetal Intestine Large	intestine
27	chr1:172466800-172468600	Weak transcription	Fetal Intestine Small	intestine
28	chr1:172466800-172468800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr1:172466800-172468800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:172466800-172468800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:172466800-172468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:172466800-172468800	Weak transcription	Fetal Lung	lung
33	chr1:172466800-172468800	Weak transcription	Placenta	Placenta
34	chr1:172466800-172468800	Weak transcription	Pancreas	Pancrea
35	chr1:172466800-172468800	Weak transcription	HMEC	breast
36	chr1:172466800-172468800	Weak transcription	K562	blood
37	chr1:172466800-172469400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:172466800-172476400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr1:172466800-172477200	Weak transcription	Left Ventricle	heart

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