Variant report

Variant	rs7549441
Chromosome Location	chr1:172473238-172473239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172468358..172470572-chr1:172471626..172474373,2	MCF-7	breast:
2	chr1:172466607..172473945-chr1:172474467..172485611,18	MCF-7	breast:
3	chr1:172468168..172471108-chr1:172473106..172474837,2	K562	blood:
4	chr1:172472207..172475097-chr1:172476756..172478473,2	K562	blood:
5	chr1:172464396..172473941-chr1:172479690..172484856,11	MCF-7	breast:
6	chr1:172472631..172474136-chr1:172499520..172501822,2	MCF-7	breast:
7	chr1:172471627..172474558-chr1:172496205..172498413,2	MCF-7	breast:
8	chr1:172463775..172466604-chr1:172473062..172475753,2	K562	blood:
9	chr1:172473168..172475053-chr1:172476181..172478797,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10489278	0.81[EUR][1000 genomes]
rs10489279	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911822	0.83[ASN][1000 genomes]
rs10911823	0.83[ASN][1000 genomes]
rs12117531	0.83[ASN][1000 genomes]
rs12724887	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12729335	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12729948	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12730136	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12731039	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12731130	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12739997	0.82[EUR][1000 genomes]
rs12740436	0.83[EUR][1000 genomes]
rs12749864	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12750740	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12752056	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12753093	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12754650	0.83[EUR][1000 genomes]
rs12756519	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12758548	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12760161	0.96[ASN][1000 genomes]
rs17370159	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1984403	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2516064	0.87[ASN][1000 genomes]
rs3213552	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34134854	0.82[EUR][1000 genomes]
rs35702642	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35780299	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3754424	0.81[EUR][1000 genomes]
rs68164208	0.83[EUR][1000 genomes]
rs7517917	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172466800-172476400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:172466800-172477200	Weak transcription	Left Ventricle	heart
3	chr1:172470000-172473800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:172470800-172479200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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