The 2.0 version of rSNPBase

Variant report

Variant rs34134854
Chromosome Location chr1:172560426-172560427
allele A/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172519400-172571600 Weak transcription Brain Angular Gyrus brain
2 chr1:172535600-172569200 Weak transcription Gastric stomach
3 chr1:172536000-172565400 Weak transcription Ovary ovary
4 chr1:172536000-172565600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:172536000-172566000 Weak transcription Aorta Aorta
6 chr1:172537400-172565600 Weak transcription Lung lung
7 chr1:172540200-172581000 Weak transcription Colonic Mucosa Colon
8 chr1:172540400-172565600 Weak transcription Esophagus oesophagus
9 chr1:172540400-172565800 Weak transcription Pancreas Pancrea
10 chr1:172540600-172565400 Weak transcription Fetal Intestine Small intestine
11 chr1:172541600-172565400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:172548400-172565600 Weak transcription Rectal Smooth Muscle rectum
13 chr1:172551400-172565200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr1:172554200-172562800 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr1:172554600-172561400 Strong transcription HUES48 Cell Line embryonic stem cell
16 chr1:172554800-172560600 Strong transcription iPS-18 Cell Line embryonic stem cell
17 chr1:172555000-172560600 Strong transcription Primary T regulatory cells fromperipheralblood blood
18 chr1:172555400-172560600 Strong transcription H1 Cell Line embryonic stem cell
19 chr1:172555800-172561400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:172556000-172560600 Strong transcription iPS-20b Cell Line embryonic stem cell
21 chr1:172556000-172565600 Weak transcription Spleen Spleen
22 chr1:172556400-172565400 Strong transcription HUES6 Cell Line embryonic stem cell
23 chr1:172557000-172560600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr1:172557200-172560600 Strong transcription Primary T helper naive cells fromperipheralblood blood
25 chr1:172557400-172560600 Strong transcription Primary T cells fromperipheralblood blood
26 chr1:172557400-172560600 Strong transcription Fetal Intestine Large intestine
27 chr1:172557400-172581200 Weak transcription Fetal Heart heart
28 chr1:172557600-172560600 Strong transcription Adipose Nuclei Adipose
29 chr1:172557600-172574600 Weak transcription Stomach Mucosa stomach
30 chr1:172557800-172560600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:172557800-172560600 Strong transcription Primary hematopoietic stem cells short term culture blood
32 chr1:172558400-172560600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:172558400-172565600 Weak transcription Pancreatic Islets Pancreatic Islet
34 chr1:172558400-172565800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr1:172558600-172560600 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr1:172559000-172560600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr1:172559000-172565200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
38 chr1:172559000-172583400 Weak transcription ES-WA7 Cell Line embryonic stem cell
39 chr1:172559200-172565000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:172559200-172565600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:172559200-172566000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr1:172559400-172571600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr1:172559600-172560600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:172559800-172560600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:172559800-172565400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr1:172559800-172565400 Weak transcription Fetal Stomach stomach
47 chr1:172559800-172573400 Weak transcription Fetal Brain Male brain
48 chr1:172560000-172561400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr1:172560000-172563600 Weak transcription Fetal Muscle Leg muscle
50 chr1:172560000-172563800 Weak transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015