Variant report

Variant	rs12743641
Chromosome Location	chr1:172592089-172592090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172591067..172593571-chr1:172597520..172599763,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10489278	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10489279	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12724887	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12727056	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729335	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12729948	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12730136	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12731039	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12731130	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12737154	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12739997	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12740436	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12749864	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12750740	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12752056	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12752646	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12754650	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12756519	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12758548	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17370159	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2227189	0.98[ASN][1000 genomes]
rs2516064	0.86[ASN][1000 genomes]
rs3213552	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34134854	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35702642	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35780299	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3754424	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68164208	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs730278	0.91[ASN][1000 genomes]
rs763109	0.91[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172566600-172595800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:172589600-172598600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172591000-172592400	Enhancers	Primary monocytes fromperipheralblood	blood

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