The 2.0 version of rSNPBase

Variant report

Variant rs2227189
Chromosome Location chr1:172583552-172583553
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172566600-172595800 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:172570600-172584000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr1:172570600-172585400 Weak transcription Aorta Aorta
4 chr1:172576800-172585400 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr1:172579400-172585400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:172579600-172585200 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:172579800-172588600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:172580000-172583800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr1:172580000-172584200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:172580000-172584400 Weak transcription HSMMtube muscle
11 chr1:172580000-172585400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr1:172580200-172585000 Weak transcription Duodenum Mucosa Duodenum
13 chr1:172580200-172589800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr1:172580400-172584000 Weak transcription Dnd41 blood
15 chr1:172580600-172583600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr1:172580600-172585400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr1:172580800-172583600 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr1:172580800-172583600 Weak transcription Adipose Nuclei Adipose
19 chr1:172580800-172583800 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr1:172580800-172583800 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr1:172580800-172585000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:172580800-172585400 Weak transcription Placenta Placenta
23 chr1:172580800-172588800 Weak transcription NH-A brain
24 chr1:172581000-172583600 Weak transcription Primary hematopoietic stem cells blood
25 chr1:172581000-172583800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr1:172581000-172583800 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr1:172581000-172584000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:172581000-172584400 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr1:172581000-172585200 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr1:172581000-172585200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr1:172581000-172585600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:172581000-172585800 Weak transcription Placenta Amnion Placenta Amnion
33 chr1:172581000-172586400 Weak transcription Primary T cells from cord blood blood
34 chr1:172581000-172589400 Weak transcription Primary T cells fromperipheralblood blood
35 chr1:172581200-172584000 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr1:172581200-172584000 Weak transcription Primary B cells from cord blood blood
37 chr1:172581200-172584000 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:172581200-172584400 Weak transcription Primary T helper cells PMA-I stimulated --
39 chr1:172581200-172584400 Weak transcription Primary T helper cells fromperipheralblood blood
40 chr1:172581200-172584600 Weak transcription Primary monocytes fromperipheralblood blood
41 chr1:172581600-172584200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:172582000-172584000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr1:172582000-172585200 Weak transcription Monocytes-CD14+_RO01746 blood
44 chr1:172582000-172588600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
45 chr1:172582600-172585400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015