Variant report

Variant	rs12752646
Chromosome Location	chr1:172596625-172596626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172596279..172598821-chr1:172607149..172609818,2	MCF-7	breast:
2	chr1:172595240..172596815-chr1:172605161..172606970,2	K562	blood:
3	chr1:172593455..172595873-chr1:172596177..172598039,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10489278	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10489279	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12724887	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12727056	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729335	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12729948	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12730136	0.95[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12731039	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12731130	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12737154	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12739997	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12740436	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12743641	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12749864	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12750740	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12752056	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12754650	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12756519	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12758548	0.82[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12760161	0.92[JPT][hapmap]
rs17370159	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1984403	0.83[CEU][hapmap]
rs2227189	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2516064	0.87[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs3213552	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34134854	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35702642	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35780299	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3754424	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68164208	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs730278	0.91[ASN][1000 genomes]
rs763109	0.91[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172589600-172598600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172594800-172597200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:172595200-172598800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:172595400-172598600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:172595800-172597800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr1:172596000-172597600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:172596000-172598200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr1:172596000-172600400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:172596200-172597000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:172596200-172597000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:172596200-172597600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr1:172596200-172598200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:172596200-172600800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:172596400-172597400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr1:172596400-172597600	Enhancers	Primary T cells from cord blood	blood
16	chr1:172596400-172598400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr1:172596600-172596800	Enhancers	NHEK	skin
18	chr1:172596600-172597200	Enhancers	HepG2	liver
19	chr1:172596600-172597600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:172596600-172598000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr1:172596600-172598200	Enhancers	Dnd41	blood

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