Variant report

Variant	rs1986724
Chromosome Location	chr10:50364468-50364469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50351001..50354708-chr10:50363715..50366252,3	K562	blood:
2	chr10:50363165..50364785-chr10:50372172..50374062,3	K562	blood:
3	chr10:50363975..50366522-chr10:50367488..50370689,4	K562	blood:
4	chr10:50349765..50352493-chr10:50363448..50365064,2	K562	blood:
5	chr10:50339347..50342012-chr10:50362966..50365728,2	K562	blood:
6	chr10:50362714..50364544-chr10:50380646..50383055,2	K562	blood:
7	chr10:50358962..50361872-chr10:50363611..50365233,2	MCF-7	breast:
8	chr10:50343720..50346032-chr10:50362961..50365747,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17701543	1.00[YRI][hapmap]
rs4442461	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50364600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:50359400-50365200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
6	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:50359600-50364600	Weak transcription	Fetal Thymus	thymus
8	chr10:50362200-50370600	Weak transcription	Spleen	Spleen
9	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:50362600-50365200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:50363200-50365600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:50363600-50365200	Strong transcription	Adipose Nuclei	Adipose
13	chr10:50364000-50364800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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