Variant report

Variant	rs17701543
Chromosome Location	chr10:50426613-50426614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10508912	0.90[JPT][hapmap]
rs10745253	0.97[ASN][1000 genomes]
rs10857449	0.95[ASN][1000 genomes]
rs12253763	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs12411415	0.88[CEU][hapmap]
rs17701549	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17774213	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17774224	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17774280	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1986724	1.00[YRI][hapmap]
rs4442461	1.00[YRI][hapmap]
rs4448612	0.97[ASN][1000 genomes]
rs58507147	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6537512	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7910476	0.88[CEU][hapmap];0.93[MEX][hapmap]
rs7922957	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17701543	EPHX2	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50421600-50431400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50422000-50429000	Weak transcription	Left Ventricle	heart
3	chr10:50425000-50427800	Enhancers	K562	blood
4	chr10:50426200-50428800	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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