Variant report

Variant	rs7922957
Chromosome Location	chr10:50390194-50390195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr10:50389937-50390304	K562	blood:	n/a	n/a
2	RUNX3	chr10:50389940-50390310	GM12878	blood:	n/a	n/a
3	MYC	chr10:50390141-50390395	K562	blood:	n/a	n/a
4	IRF1	chr10:50389687-50390271	K562	blood:	n/a	n/a
5	TBL1XR1	chr10:50389983-50390528	K562	blood:	n/a	n/a
6	IRF1	chr10:50389643-50393159	K562	blood:	n/a	chr10:50390779-50390788 chr10:50393131-50393140 chr10:50391901-50391910
7	RCOR1	chr10:50389999-50390315	K562	blood:	n/a	n/a
8	BATF	chr10:50389998-50390208	GM12878	blood:	n/a	n/a
9	EBF1	chr10:50390016-50390241	GM12878	blood:	n/a	n/a
10	JUN	chr10:50389542-50390377	K562	blood:	n/a	n/a
11	MAFK	chr10:50390047-50390258	K562	blood:	n/a	n/a
12	MAFF	chr10:50390105-50390451	K562	blood:	n/a	n/a
13	ARID3A	chr10:50390082-50393165	K562	blood:	n/a	n/a
14	POLR2A	chr10:50389942-50393522	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:50389858..50391457-chr10:50482745..50485409,2	K562	blood:
2	chr10:50388735..50392807-chr10:50413535..50416257,3	K562	blood:
3	chr10:50389858..50392906-chr10:50482187..50485409,3	K562	blood:
4	chr10:50388067..50390396-chr10:50495469..50498227,2	K562	blood:

Variant related genes	Relation type
C10orf128	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11101017	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12411415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17701543	0.88[CEU][hapmap]
rs1962336	0.80[CHB][hapmap]
rs2725194	0.86[AMR][1000 genomes]
rs2804928	0.82[AMR][1000 genomes]
rs2804932	0.82[AMR][1000 genomes]
rs6537507	0.80[CHB][hapmap]
rs7082074	0.80[CHB][hapmap]
rs7094833	0.80[CHB][hapmap]
rs7910476	1.00[CEU][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7912402	0.94[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50376800-50395200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:50381800-50394800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:50383400-50395200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:50384400-50396000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:50385400-50391800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:50386000-50390800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:50386000-50394800	Weak transcription	Brain Anterior Caudate	brain
8	chr10:50386000-50395200	Weak transcription	Psoas Muscle	Psoas
9	chr10:50386200-50391600	Weak transcription	HUVEC	blood vessel
10	chr10:50386200-50392800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:50386200-50396000	Weak transcription	Placenta	Placenta
12	chr10:50386400-50392400	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:50386400-50395200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:50386600-50391000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:50386600-50391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:50386600-50391800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:50386600-50395200	Weak transcription	Lung	lung
18	chr10:50386600-50395200	Weak transcription	Right Ventricle	heart
19	chr10:50386800-50395200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:50387000-50394600	Weak transcription	Brain Substantia Nigra	brain
21	chr10:50387200-50391600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:50387400-50391600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:50387600-50391600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr10:50388400-50391600	Weak transcription	Adipose Nuclei	Adipose
25	chr10:50388400-50391600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:50388400-50392800	Weak transcription	Right Atrium	heart
27	chr10:50388400-50394800	Weak transcription	Colonic Mucosa	Colon
28	chr10:50388600-50390800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:50388600-50391000	Weak transcription	Left Ventricle	heart
30	chr10:50388600-50391000	Weak transcription	Spleen	Spleen
31	chr10:50388600-50391600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr10:50388600-50391600	Weak transcription	Fetal Thymus	thymus
33	chr10:50388600-50392400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:50389200-50390200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:50389200-50390200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:50389200-50390200	Weak transcription	Dnd41	blood
37	chr10:50389400-50390200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:50389600-50390200	Weak transcription	Primary B cells from cord blood	blood
39	chr10:50389600-50392600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:50389800-50392800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr10:50390000-50390200	Enhancers	HSMM	muscle
42	chr10:50390000-50390400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:50390000-50390400	Enhancers	Fetal Lung	lung
44	chr10:50390000-50390400	Flanking Active TSS	GM12878-XiMat	blood
45	chr10:50390000-50391000	Genic enhancers	K562	blood

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