Variant report

Variant	rs7082074
Chromosome Location	chr10:50399844-50399845
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr10:50399263-50399852	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50399505..50401481-chr10:50433007..50435119,2	K562	blood:

Variant related genes	Relation type
C10orf128	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10776544	0.83[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.88[ASN][1000 genomes]
rs10857438	0.98[ASN][1000 genomes]
rs10857439	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10857441	0.83[ASN][1000 genomes]
rs11101006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11101015	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11101016	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12570293	0.96[ASN][1000 genomes]
rs12768927	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17009325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17701363	0.86[ASN][1000 genomes]
rs1962336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2377949	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2377994	0.97[ASN][1000 genomes]
rs2377995	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377997	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466748	0.81[CHB][hapmap]
rs55908723	0.86[ASN][1000 genomes]
rs61848458	0.86[ASN][1000 genomes]
rs6537507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7082708	0.90[JPT][hapmap]
rs7094833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7475519	0.97[ASN][1000 genomes]
rs7912402	0.84[CEU][hapmap]
rs7919144	0.85[ASN][1000 genomes]
rs7922957	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50397000-50401600	Weak transcription	HUVEC	blood vessel
2	chr10:50398600-50400000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:50398600-50402600	Weak transcription	Right Atrium	heart
4	chr10:50398600-50403400	Weak transcription	Spleen	Spleen
5	chr10:50399200-50400000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:50399200-50402400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:50399200-50402400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:50399200-50404600	Weak transcription	K562	blood
9	chr10:50399400-50400000	Enhancers	GM12878-XiMat	blood
10	chr10:50399400-50401800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:50399400-50402400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:50399600-50401800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:50399600-50402600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:50399800-50400600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr10:50399800-50402200	Weak transcription	Primary B cells from cord blood	blood

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