Variant report

Variant	rs17701363
Chromosome Location	chr10:50383277-50383278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50376651..50379142-chr10:50381763..50383649,2	MCF-7	breast:
2	chr10:50381550..50383813-chr10:50395323..50397024,2	MCF-7	breast:
3	chr10:50381674..50383978-chr10:50507199..50508733,2	K562	blood:
4	chr10:50380358..50383451-chr10:50384690..50387473,3	MCF-7	breast:
5	chr10:50379304..50381161-chr10:50382104..50383879,2	MCF-7	breast:
6	chr10:50338354..50340980-chr10:50380795..50383711,2	K562	blood:

Variant related genes	Relation type
ENSG00000177354	Chromatin interaction
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10776544	0.98[ASN][1000 genomes]
rs10857438	0.88[ASN][1000 genomes]
rs11101006	0.93[ASN][1000 genomes]
rs11101015	0.83[ASN][1000 genomes]
rs11101016	0.83[ASN][1000 genomes]
rs12570293	0.86[ASN][1000 genomes]
rs12768927	0.93[ASN][1000 genomes]
rs17009325	0.86[ASN][1000 genomes]
rs1962336	0.93[ASN][1000 genomes]
rs2002332	0.88[ASN][1000 genomes]
rs2377949	0.93[ASN][1000 genomes]
rs2377994	0.86[ASN][1000 genomes]
rs2377995	0.86[ASN][1000 genomes]
rs2377996	0.86[ASN][1000 genomes]
rs2377997	0.86[ASN][1000 genomes]
rs55908723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537507	0.85[ASN][1000 genomes]
rs7082074	0.86[ASN][1000 genomes]
rs7094833	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7475519	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50367600-50384600	Weak transcription	Dnd41	blood
2	chr10:50372000-50384000	Weak transcription	Colonic Mucosa	Colon
3	chr10:50372800-50386200	Weak transcription	Pancreas	Pancrea
4	chr10:50373200-50385200	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:50375000-50384000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:50376800-50395200	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:50377800-50384000	Weak transcription	NHDF-Ad	bronchial
8	chr10:50378000-50386000	Enhancers	Fetal Muscle Leg	muscle
9	chr10:50378000-50388600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:50378600-50384800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:50379600-50383800	Enhancers	Primary B cells from cord blood	blood
12	chr10:50380200-50385200	Weak transcription	HSMMtube	muscle
13	chr10:50380400-50386600	Enhancers	Right Ventricle	heart
14	chr10:50380600-50386400	Enhancers	Fetal Muscle Trunk	muscle
15	chr10:50381000-50384000	Weak transcription	Spleen	Spleen
16	chr10:50381000-50384200	Weak transcription	Fetal Thymus	thymus
17	chr10:50381000-50385000	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:50381200-50384800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:50381400-50383400	Enhancers	Adipose Nuclei	Adipose
20	chr10:50381400-50384400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:50381400-50385000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:50381600-50383800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:50381600-50384200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:50381600-50385000	Weak transcription	Esophagus	oesophagus
25	chr10:50381800-50384200	Weak transcription	Brain Substantia Nigra	brain
26	chr10:50381800-50394800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:50382000-50383400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:50382000-50384200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:50382200-50386600	Enhancers	Left Ventricle	heart
30	chr10:50382200-50390000	Enhancers	K562	blood
31	chr10:50382400-50383400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:50382600-50383400	Enhancers	Fetal Intestine Small	intestine
33	chr10:50382800-50383400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:50382800-50383800	Weak transcription	GM12878-XiMat	blood
35	chr10:50382800-50384400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr10:50382800-50384600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:50382800-50384800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr10:50382800-50385600	Enhancers	Right Atrium	heart
39	chr10:50383000-50383400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:50383000-50383400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:50383000-50383400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:50383000-50383400	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr10:50383000-50384400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:50383000-50385000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:50383200-50383400	Bivalent Enhancer	Placenta	Placenta
46	chr10:50383200-50384200	Weak transcription	Lung	lung
47	chr10:50383200-50384600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:50383200-50385000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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