Variant report

Variant	rs6537507
Chromosome Location	chr10:50412667-50412668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50407266..50409200-chr10:50410026..50412858,2	K562	blood:
2	chr10:50406315..50409396-chr10:50411976..50414660,3	K562	blood:
3	chr10:50385980..50389679-chr10:50411175..50413156,4	K562	blood:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10776544	0.81[ASW][hapmap];0.83[CEU][hapmap];0.95[CHB][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.92[YRI][hapmap];0.87[ASN][1000 genomes]
rs10857438	0.97[ASN][1000 genomes]
rs10857439	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10857441	0.84[ASN][1000 genomes]
rs11101006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11101015	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12411415	0.80[CHB][hapmap]
rs12570293	0.95[ASN][1000 genomes]
rs12768927	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17009325	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17701363	0.85[ASN][1000 genomes]
rs1962336	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2377949	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2377994	0.98[ASN][1000 genomes]
rs2377995	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2377996	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2377997	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55908723	0.85[ASN][1000 genomes]
rs61848458	0.85[ASN][1000 genomes]
rs7082074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7082708	0.90[JPT][hapmap]
rs7094833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7475519	0.98[ASN][1000 genomes]
rs7912402	0.83[CEU][hapmap]
rs7919144	0.87[ASN][1000 genomes]
rs7922957	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50412600-50412800	Bivalent Enhancer	Esophagus	oesophagus

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