Variant report
| Variant | rs10857439 |
|---|---|
| Chromosome Location | chr10:50417799-50417800 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10857438 | 0.84[ASN][1000 genomes] |
| rs10857441 | 0.97[ASN][1000 genomes] |
| rs10857448 | 0.81[ASN][1000 genomes] |
| rs11101006 | 0.83[EUR][1000 genomes] |
| rs11101015 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11101016 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11101027 | 0.85[ASN][1000 genomes] |
| rs11101029 | 0.81[ASN][1000 genomes] |
| rs12570293 | 0.82[ASN][1000 genomes] |
| rs17009325 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17774170 | 0.81[ASN][1000 genomes] |
| rs1962336 | 0.83[EUR][1000 genomes] |
| rs2377994 | 0.85[ASN][1000 genomes] |
| rs2377995 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2377996 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2377997 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4498896 | 0.83[ASN][1000 genomes] |
| rs6537507 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7082074 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7082708 | 0.82[ASN][1000 genomes] |
| rs7475519 | 0.85[ASN][1000 genomes] |
| rs7919144 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:50413200-50421200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
