Variant report

Variant	rs17774170
Chromosome Location	chr10:50421139-50421140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10857439	0.81[ASN][1000 genomes]
rs10857441	0.84[ASN][1000 genomes]
rs10857448	0.94[ASN][1000 genomes]
rs11101006	0.85[JPT][hapmap]
rs11101027	0.96[ASN][1000 genomes]
rs11101029	0.91[ASN][1000 genomes]
rs11101032	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11101057	0.89[ASN][1000 genomes]
rs1962336	0.89[JPT][hapmap]
rs2377949	0.89[JPT][hapmap]
rs4498896	0.94[ASN][1000 genomes]
rs4838470	0.87[ASN][1000 genomes]
rs6537507	0.89[JPT][hapmap]
rs7082074	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs7082708	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7094833	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs7919144	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50413200-50421200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:50420000-50421600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:50420000-50421600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:50420000-50421600	Enhancers	K562	blood
5	chr10:50420200-50421200	Enhancers	Dnd41	blood
6	chr10:50420200-50421600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:50420200-50421600	Enhancers	Fetal Thymus	thymus
8	chr10:50421000-50421400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:50421000-50421400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr10:50421000-50421400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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