Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:50425679..50427944-chr10:50429603..50431327,2	MCF-7	breast:
2	chr10:50378923..50381166-chr10:50424445..50426719,2	K562	blood:
3	chr10:50415216..50419183-chr10:50424898..50429139,5	K562	blood:
4	chr10:50420366..50424495-chr10:50424972..50428260,6	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10776544	0.83[JPT][hapmap]
rs10857439	0.83[ASN][1000 genomes]
rs10857441	0.82[ASN][1000 genomes]
rs10857446	0.86[AFR][1000 genomes]
rs10857448	0.97[ASN][1000 genomes]
rs11101006	0.85[JPT][hapmap]
rs11101027	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11101029	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11101032	0.95[ASN][1000 genomes]
rs11101057	0.92[ASN][1000 genomes]
rs12244648	0.89[AFR][1000 genomes]
rs12762787	0.83[AFR][1000 genomes]
rs12766907	0.83[AFR][1000 genomes]
rs12769447	0.83[AFR][1000 genomes]
rs17774170	0.94[ASN][1000 genomes]
rs1962336	0.89[JPT][hapmap]
rs2377949	0.89[JPT][hapmap]
rs35374350	0.90[AFR][1000 genomes]
rs4838470	0.91[ASN][1000 genomes]
rs6537507	0.89[JPT][hapmap]
rs7082074	0.89[JPT][hapmap]
rs7082708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7094833	0.89[JPT][hapmap]
rs7899784	0.89[AFR][1000 genomes]
rs7912193	0.83[AFR][1000 genomes]
rs7919144	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50421600-50431400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50422000-50429000	Weak transcription	Left Ventricle	heart
3	chr10:50425000-50427800	Enhancers	K562	blood
4	chr10:50426200-50428800	Weak transcription	Right Atrium	heart

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