Variant report

Variant	rs4838470
Chromosome Location	chr10:50451667-50451668
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50446994..50449831-chr10:50450885..50453374,2	K562	blood:
2	chr10:50446413..50449430-chr10:50451528..50453716,3	K562	blood:
3	chr10:50443853..50446189-chr10:50448741..50451708,2	K562	blood:
4	chr10:50451424..50453022-chr10:50507349..50510137,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10776544	0.88[CHD][hapmap]
rs10857448	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101006	0.90[JPT][hapmap]
rs11101027	0.88[ASN][1000 genomes]
rs11101029	0.85[ASN][1000 genomes]
rs11101032	0.92[ASN][1000 genomes]
rs11101057	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17774170	0.87[ASN][1000 genomes]
rs1962336	0.90[CHD][hapmap];0.90[JPT][hapmap]
rs2377949	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs4498896	0.91[ASN][1000 genomes]
rs6537507	0.90[JPT][hapmap]
rs7082074	0.90[JPT][hapmap]
rs7082708	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7094833	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50447600-50452400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr10:50447600-50453000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:50449800-50452200	Enhancers	Spleen	Spleen
4	chr10:50450000-50451800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:50450800-50452200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr10:50450800-50452400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr10:50450800-50452400	Enhancers	Primary B cells from cord blood	blood
8	chr10:50450800-50452400	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:50451000-50452000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr10:50451000-50452200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr10:50451000-50452200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:50451000-50452200	Enhancers	Adipose Nuclei	Adipose
13	chr10:50451000-50454200	Weak transcription	Esophagus	oesophagus
14	chr10:50451200-50451800	Enhancers	Brain Hippocampus Middle	brain
15	chr10:50451200-50452000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr10:50451200-50452400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr10:50451400-50452400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr10:50451400-50452600	Weak transcription	Right Atrium	heart
19	chr10:50451600-50451800	Enhancers	Liver	Liver
20	chr10:50451600-50452200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:50451600-50452600	Weak transcription	Pancreas	Pancrea
22	chr10:50451600-50452800	Enhancers	Brain Substantia Nigra	brain
23	chr10:50451600-50453000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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