Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50420366..50424495-chr10:50424972..50428260,6	K562	blood:
2	chr10:50423873..50425492-chr10:50434426..50437308,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10776544	0.90[CHD][hapmap];0.81[MEX][hapmap]
rs10857439	0.85[ASN][1000 genomes]
rs10857441	0.83[ASN][1000 genomes]
rs10857448	0.94[ASN][1000 genomes]
rs11101006	0.84[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11101029	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101032	0.92[ASN][1000 genomes]
rs11101057	0.89[ASN][1000 genomes]
rs12244648	0.85[AFR][1000 genomes]
rs17774170	0.96[ASN][1000 genomes]
rs1962336	0.84[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.80[TSI][hapmap]
rs2377949	0.80[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs35374350	0.86[AFR][1000 genomes]
rs4498896	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4838470	0.88[ASN][1000 genomes]
rs6537507	0.84[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap]
rs7082074	0.84[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7082708	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7094833	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7899784	0.85[AFR][1000 genomes]
rs7919144	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50421600-50425000	Weak transcription	K562	blood
2	chr10:50421600-50431400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:50422000-50429000	Weak transcription	Left Ventricle	heart
4	chr10:50423400-50425000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:50424000-50424600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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