Variant report

Variant	rs11101029
Chromosome Location	chr10:50425091-50425092
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10857439	0.81[ASN][1000 genomes]
rs10857448	0.91[ASN][1000 genomes]
rs11101027	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101032	0.89[ASN][1000 genomes]
rs11101057	0.86[ASN][1000 genomes]
rs12769447	0.80[AFR][1000 genomes]
rs17774170	0.91[ASN][1000 genomes]
rs4498896	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4838470	0.85[ASN][1000 genomes]
rs7082708	0.91[ASN][1000 genomes]
rs7919144	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50421600-50431400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50422000-50429000	Weak transcription	Left Ventricle	heart
3	chr10:50424800-50425200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:50425000-50425200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:50425000-50427800	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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