Variant report

Variant	rs10857438
Chromosome Location	chr10:50397681-50397682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:50397671-50397716	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
C10orf128	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10776544	0.87[ASN][1000 genomes]
rs10857439	0.84[ASN][1000 genomes]
rs10857441	0.84[ASN][1000 genomes]
rs11101006	0.92[ASN][1000 genomes]
rs11101015	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11101016	0.96[ASN][1000 genomes]
rs12570293	0.98[ASN][1000 genomes]
rs12768927	0.92[ASN][1000 genomes]
rs17009325	0.98[ASN][1000 genomes]
rs17701363	0.88[ASN][1000 genomes]
rs1962336	0.92[ASN][1000 genomes]
rs2377949	0.93[ASN][1000 genomes]
rs2377994	0.98[ASN][1000 genomes]
rs2377995	0.98[ASN][1000 genomes]
rs2377996	0.98[ASN][1000 genomes]
rs2377997	0.98[ASN][1000 genomes]
rs55908723	0.88[ASN][1000 genomes]
rs61848458	0.88[ASN][1000 genomes]
rs6537507	0.97[ASN][1000 genomes]
rs7082074	0.98[ASN][1000 genomes]
rs7094833	0.93[ASN][1000 genomes]
rs7475519	0.98[ASN][1000 genomes]
rs7919144	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50391600-50399400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:50394600-50398600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr10:50394800-50399000	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:50395200-50398600	Enhancers	Spleen	Spleen
5	chr10:50395400-50398400	Weak transcription	Esophagus	oesophagus
6	chr10:50396200-50397800	Enhancers	Fetal Thymus	thymus
7	chr10:50396200-50398000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr10:50396200-50398600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:50396400-50398800	Enhancers	Fetal Muscle Leg	muscle
10	chr10:50396400-50399200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:50396400-50399200	Enhancers	Placenta	Placenta
12	chr10:50396600-50398000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:50396600-50398200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:50396600-50398200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr10:50396600-50398400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr10:50396600-50398600	Enhancers	Lung	lung
17	chr10:50396600-50399200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:50396600-50399200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:50396800-50397800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr10:50396800-50398000	Enhancers	Brain Substantia Nigra	brain
21	chr10:50396800-50398000	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:50396800-50398000	Enhancers	Right Atrium	heart
23	chr10:50396800-50398200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:50396800-50398400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:50396800-50398400	Enhancers	Adipose Nuclei	Adipose
26	chr10:50396800-50398600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:50396800-50398600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:50396800-50398800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:50396800-50399000	Enhancers	Fetal Muscle Trunk	muscle
30	chr10:50396800-50399200	Enhancers	Left Ventricle	heart
31	chr10:50396800-50399200	Enhancers	K562	blood
32	chr10:50396800-50399400	Enhancers	Primary B cells from peripheral blood	blood
33	chr10:50397000-50397800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
34	chr10:50397000-50397800	Enhancers	Brain Angular Gyrus	brain
35	chr10:50397000-50397800	Enhancers	Brain Cingulate Gyrus	brain
36	chr10:50397000-50398000	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr10:50397000-50398200	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr10:50397000-50398200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr10:50397000-50399600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:50397000-50401600	Weak transcription	HUVEC	blood vessel
41	chr10:50397200-50397800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
42	chr10:50397400-50397800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:50397400-50398200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr10:50397600-50397800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
45	chr10:50397600-50397800	Enhancers	Pancreas	Pancrea
46	chr10:50397600-50397800	Enhancers	Psoas Muscle	Psoas
47	chr10:50397600-50397800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr10:50397600-50398000	Enhancers	Liver	Liver
49	chr10:50397600-50398000	Enhancers	Right Ventricle	heart
50	chr10:50397600-50398000	Enhancers	Hela-S3	cervix

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