Variant report

No.	Distal block	Cell Line	Cell type
1	chr10:50388735..50392807-chr10:50413535..50416257,3	K562	blood:
2	chr10:50406315..50409396-chr10:50411976..50414660,3	K562	blood:
3	chr10:50390209..50392807-chr10:50413180..50415215,3	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10776544	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10857438	0.98[ASN][1000 genomes]
rs10857439	0.85[ASN][1000 genomes]
rs10857441	0.86[ASN][1000 genomes]
rs11101006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11101015	0.97[ASN][1000 genomes]
rs11101016	0.97[ASN][1000 genomes]
rs12411415	0.80[CHB][hapmap]
rs12570293	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12768927	0.90[ASN][1000 genomes]
rs17009325	0.97[ASN][1000 genomes]
rs17701363	0.86[ASN][1000 genomes]
rs1962336	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2377949	0.90[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2377995	0.97[ASN][1000 genomes]
rs2377996	0.97[ASN][1000 genomes]
rs2377997	0.97[ASN][1000 genomes]
rs55908723	0.86[ASN][1000 genomes]
rs61848458	0.86[ASN][1000 genomes]
rs6537507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7082074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7082708	0.90[JPT][hapmap]
rs7089101	1.00[YRI][hapmap]
rs7094833	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7475519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919144	0.85[ASN][1000 genomes]
rs7922957	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50413200-50421200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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