Variant report

Variant	rs7089101
Chromosome Location	chr10:50413093-50413094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2377948	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs56393463	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089293	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133111	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133112	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903702	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7917679	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920466	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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