Variant report

Variant	rs7920466
Chromosome Location	chr10:50403449-50403450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12258230	1.00[MEX][hapmap]
rs2377948	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs56393463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7067848	1.00[MEX][hapmap]
rs7073776	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089101	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133112	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7917679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50399200-50404600	Weak transcription	K562	blood
2	chr10:50401400-50403600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:50402400-50403600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:50402800-50403600	Enhancers	HUVEC	blood vessel
5	chr10:50403200-50403600	Enhancers	Right Atrium	heart
6	chr10:50403400-50403600	Enhancers	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links