Variant report

Variant	rs7917679
Chromosome Location	chr10:50399219-50399220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2377948	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs56393463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073776	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089101	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7089293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133112	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7920466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50391600-50399400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:50396800-50399400	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:50397000-50399600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:50397000-50401600	Weak transcription	HUVEC	blood vessel
5	chr10:50397600-50399400	Flanking Active TSS	GM12878-XiMat	blood
6	chr10:50398600-50399800	Enhancers	Primary B cells from cord blood	blood
7	chr10:50398600-50400000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:50398600-50402600	Weak transcription	Right Atrium	heart
9	chr10:50398600-50403400	Weak transcription	Spleen	Spleen
10	chr10:50398800-50399400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:50398800-50399400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:50399000-50399600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:50399200-50399600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr10:50399200-50400000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:50399200-50402400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:50399200-50402400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:50399200-50404600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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