Variant report

Variant	rs1987968
Chromosome Location	chr4:142710748-142710749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10014610	0.87[ASN][1000 genomes]
rs10018460	0.91[ASN][1000 genomes]
rs10519610	1.00[JPT][hapmap]
rs10519625	0.87[ASN][1000 genomes]
rs12498901	1.00[JPT][hapmap]
rs12504148	1.00[JPT][hapmap]
rs12510514	1.00[JPT][hapmap]
rs1353033	0.87[ASN][1000 genomes]
rs1389099	0.91[ASN][1000 genomes]
rs1493015	0.91[ASN][1000 genomes]
rs1493019	0.87[ASN][1000 genomes]
rs1607595	1.00[JPT][hapmap]
rs17364630	1.00[JPT][hapmap]
rs1907948	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120050	0.87[ASN][1000 genomes]
rs28504216	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28528751	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4956405	1.00[JPT][hapmap]
rs4956413	0.87[ASN][1000 genomes]
rs6537073	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6537074	0.87[ASN][1000 genomes]
rs6842735	1.00[JPT][hapmap]
rs6850492	1.00[JPT][hapmap]
rs7349640	1.00[JPT][hapmap]
rs7656341	0.87[ASN][1000 genomes]
rs7656958	0.87[ASN][1000 genomes]
rs7671458	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv830095	chr4:142695078-142884988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142709400-142710800	Weak transcription	Aorta	Aorta

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