Variant report

Variant	rs1989534
Chromosome Location	chr12:46092594-46092595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46092526..46097568-chr12:46119877..46124141,5	K562	blood:
2	chr12:46082011..46083636-chr12:46091641..46093716,2	K562	blood:

Variant related genes	Relation type
ENSG00000273015	Chromatin interaction
ENSG00000189079	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1055507	0.82[EUR][1000 genomes]
rs1055508	0.82[EUR][1000 genomes]
rs10785587	0.85[EUR][1000 genomes]
rs10785588	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10880838	0.85[EUR][1000 genomes]
rs10880839	0.84[EUR][1000 genomes]
rs10880840	0.85[EUR][1000 genomes]
rs10880842	0.83[EUR][1000 genomes]
rs10880843	0.84[EUR][1000 genomes]
rs10880845	0.84[EUR][1000 genomes]
rs1117844	0.85[EUR][1000 genomes]
rs1117845	0.85[EUR][1000 genomes]
rs1117846	0.85[EUR][1000 genomes]
rs1117847	0.85[EUR][1000 genomes]
rs11183169	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs11183172	0.84[EUR][1000 genomes]
rs11183174	0.84[EUR][1000 genomes]
rs11183176	0.81[EUR][1000 genomes]
rs1133879	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs12228699	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12582560	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12821899	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs12826362	0.85[EUR][1000 genomes]
rs1558981	0.85[EUR][1000 genomes]
rs1558985	0.85[EUR][1000 genomes]
rs1862021	0.80[EUR][1000 genomes]
rs2111965	0.84[EUR][1000 genomes]
rs2111966	0.85[EUR][1000 genomes]
rs2193753	0.83[EUR][1000 genomes]
rs2193754	0.81[EUR][1000 genomes]
rs2193755	0.85[EUR][1000 genomes]
rs2216473	0.84[EUR][1000 genomes]
rs3948580	0.85[EUR][1000 genomes]
rs4768656	0.85[EUR][1000 genomes]
rs6582568	0.85[EUR][1000 genomes]
rs6582569	0.85[EUR][1000 genomes]
rs7136397	0.85[EUR][1000 genomes]
rs726603	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7301998	0.85[EUR][1000 genomes]
rs7303324	0.83[EUR][1000 genomes]
rs7305450	0.85[EUR][1000 genomes]
rs7314841	0.84[EUR][1000 genomes]
rs7968737	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9668562	0.84[EUR][1000 genomes]
rs9669428	0.84[EUR][1000 genomes]
rs9669574	0.83[EUR][1000 genomes]
rs975502	0.85[EUR][1000 genomes]
rs975503	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899052	chr12:46068394-46175469	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	esv32607	chr12:46087430-46097227	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46088400-46097400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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