Variant report

Variant	rs7968737
Chromosome Location	chr12:46086795-46086796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:46085906..46087446-chr12:46110360..46112448,2	K562	blood:
2	chr12:46081437..46084404-chr12:46086225..46088555,2	K562	blood:
3	chr12:46085115..46087445-chr12:46112760..46114475,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1055507	0.82[EUR][1000 genomes]
rs1055508	0.82[EUR][1000 genomes]
rs10785587	0.85[EUR][1000 genomes]
rs10785588	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10880838	0.85[EUR][1000 genomes]
rs10880839	0.84[EUR][1000 genomes]
rs10880840	0.85[EUR][1000 genomes]
rs10880842	0.83[EUR][1000 genomes]
rs10880843	0.84[EUR][1000 genomes]
rs10880845	0.84[EUR][1000 genomes]
rs1117844	0.85[EUR][1000 genomes]
rs1117845	0.85[EUR][1000 genomes]
rs1117846	0.85[EUR][1000 genomes]
rs1117847	0.85[EUR][1000 genomes]
rs11183169	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs11183172	0.84[EUR][1000 genomes]
rs11183174	0.84[EUR][1000 genomes]
rs11183176	0.81[EUR][1000 genomes]
rs1133879	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs12228699	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12582560	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12821899	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs12826362	0.85[EUR][1000 genomes]
rs1558981	0.85[EUR][1000 genomes]
rs1558985	0.85[EUR][1000 genomes]
rs1862021	0.80[EUR][1000 genomes]
rs1989534	1.00[CEU][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2111965	0.84[EUR][1000 genomes]
rs2111966	0.85[EUR][1000 genomes]
rs2193753	0.83[EUR][1000 genomes]
rs2193754	0.81[EUR][1000 genomes]
rs2193755	0.85[EUR][1000 genomes]
rs2216473	0.84[EUR][1000 genomes]
rs3948580	0.85[EUR][1000 genomes]
rs4768656	0.85[EUR][1000 genomes]
rs6582568	0.85[EUR][1000 genomes]
rs6582569	0.85[EUR][1000 genomes]
rs7136397	0.85[EUR][1000 genomes]
rs726603	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs7301998	0.85[EUR][1000 genomes]
rs7303324	0.83[EUR][1000 genomes]
rs7305450	0.85[EUR][1000 genomes]
rs7314841	0.84[EUR][1000 genomes]
rs9668562	0.84[EUR][1000 genomes]
rs9669428	0.84[EUR][1000 genomes]
rs9669574	0.83[EUR][1000 genomes]
rs975502	0.85[EUR][1000 genomes]
rs975503	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899052	chr12:46068394-46175469	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46083800-46090400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr12:46083800-46090800	Weak transcription	Right Ventricle	heart
3	chr12:46084200-46088000	Weak transcription	Left Ventricle	heart
4	chr12:46086600-46087000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:46086600-46087200	Enhancers	Psoas Muscle	Psoas

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