Variant report

Variant	rs1991173
Chromosome Location	chr2:173737895-173737896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13030842	0.89[CEU][hapmap]
rs1344591	0.85[CEU][hapmap]
rs1991174	0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs2113804	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2113809	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2553011	0.85[CEU][hapmap]
rs2676501	0.85[CEU][hapmap]
rs2676502	0.85[CEU][hapmap]
rs2676517	0.94[ASW][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2676520	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3342599	chr2:173736406-173742004	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173726800-173753600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:173734400-173747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:173736200-173742400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:173736200-173742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:173736200-173742400	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links